Scaffold Ga0181397_1000392

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181397_1000392

Scaffold Ga0181397_1000392

Overview

Basic Information
Taxon OID	3300017744 Open in IMG/M
Scaffold ID	Ga0181397_1000392 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16481
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (78.12%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F023319	Metagenome	210	N
F070211	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181397_100039210	F023319	AGGAG	MSKKIKCQKEGCSNEAYPEDMENGASNLLLCDDCYTEIRYLLADYLEIHIQDIKI
Ga0181397_100039212	F070211	AGGAG	MYDPVVISLLEKNVRDLQEQLRNAYVKIKQLNDENYKLRRELGVKKDNGKNLTNSSDGVWLGDVEMPDAEHLKDE
Ga0181397_10003926	F008925	AGGAG	MKTSKPKIDEVTLNLINKLKQIDDTINEGAWEYIHLGDILRLQDAFHTTINHYDLKKKGGIGEHGADEGKYTQFWHSDYVCYTNPEAYDPSKVEKDDE

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