NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181427_1014063

Scaffold Ga0181427_1014063


Overview

Basic Information
Taxon OID3300017745 Open in IMG/M
Scaffold IDGa0181427_1014063 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2003
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046647Metagenome151Y
F077806Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0181427_10140631F077806N/AFHFGSEQFMDNNDAQVDDETRDYFIDLLSRVGAAKTLPEFVPGPLAAPVEKYQILQYWVTKNEAAQIIYDENTTPEELMAVAKKYAGEGEQEIIEMIIDSDNATEEILQYLILNDDEYGIDAIQSEKITDEWLNSLAYSEDGTLRYIAAIASDYHNRGNVLTPETADKLADDPLLHIRKRIASHPAASPETLTRVANRLMKGGEDEEHSGSVRTFLSNLLRNNNLPTNLFVPLIEWSKTRGSDAVRVDTPIDRTLAPMAMESASRNSNAPPEVLVDIYNTFDNTAQSGYRFGSYVALARNEKTPEDILLKLSKNQNQSIKYEAQKTLEKLADQTGMDSLRENFKRFLK
Ga0181427_10140632F046647GAGMKLLFENWRNHLNEGLSPKGLEERYEKFFNPKGWYFESDQELGEGAFGKVYRAENKKTGQRGAIKILPMGMDLGAAELRAELENYEFLKNNRDSMPKEVAKHFPAVYETGRIVSKIGYVIMELLEPMPTSVEKALFQTSGDIEGRRVKTKRIIADPETLSQIFDIVIGDSYFHSHVYDKLGKLTKQEPTAATYKIVEETAKEAFRAYMANEPNPALPNFTSGSGSLFKTYFKSDEEIRLASFILDSMLKMLSKIYENFDKAIAGELNDELGKEWDRYFLRSFANTTSQQLKGELAKSVIPSQMAKSSQYNVRKTAFPEA
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