NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181389_1021937

Scaffold Ga0181389_1021937


Overview

Basic Information
Taxon OID3300017746 Open in IMG/M
Scaffold IDGa0181389_1021937 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1993
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019821Metagenome227N
F021526Metagenome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0181389_10219375F019821AGGAGMTISNQTTLQELIKLGLFSEADIEKFNKKLKRVADSQARKALVDGTASAIKALVQSEVHNGNKYWSVKTAAHSLGFMSYIQTDRGIVLKALTQLTEEGYLTKIGLKTVDGKLTELTPKQVNAFQIRYVVTPVEAEGALVLAAK
Ga0181389_10219376F021526AGGAMIYFSIDYRSPPSGMGQIIDTTQPEKIGDQYNYILIDYGSDPHEDVSYVMTKFFYSEQASQEGWAGPVLPQIFQFLRDSKVTHVHDGELAYEEEGADDD
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