NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181393_1001102

Scaffold Ga0181393_1001102


Overview

Basic Information
Taxon OID3300017748 Open in IMG/M
Scaffold IDGa0181393_1001102 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9780
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021099Metagenome220N
F047384Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0181393_100110212F021099N/AMAFSDLTLTRNNIDALEELTFKGVNVTTGSTTLNLSEKDNLILGKAIKLLKTDILENLREFINDTTYSTETALLDAIYAADSEELLVDLLSYKFLELWFAQDATHKDSYSFAKAGKYYQMYNQYLTGNLRRLSGLLAKPKTTPRVRFMSLY
Ga0181393_10011022F047384N/AMAKVSNIVVITDAGGTETLTIQNYSESDELEFFNVPFDEAIDGTLRGNFRDFRRKIGLTYNLCTTPDTYRSICNNIATDLLNGAEFIYIGIDTDNVIRVVLDDGFASRVQYANQHGLFVPKINFTAYELGIDITLDFEDFRFINESSADDERDYRFIYETVTTSLDYGFIE
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