NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181393_1024142

Scaffold Ga0181393_1024142


Overview

Basic Information
Taxon OID3300017748 Open in IMG/M
Scaffold IDGa0181393_1024142 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1757
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F023748Metagenome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0181393_10241423F023748AGGAGGMSEYKYTYRFSEQTVDTRYYKVESNTKLTQSEMQDLAWSVEQTEGETFKCNEGKATFEGTEFGDDAQYQMEEGEEDLADD
Ga0181393_10241424F008925AGGAGMTTKTKPKIDTVTLNLVNALKQMDDKLNEGSWEYINLGDVLRFQDVYNETIKHYDLKKEGGIHDYGPDEGKYQQFYHSDYVCHTDPKAFDPSKVEEEDDE
Ga0181393_10241426F012581AGGAGMAKYTLYAKKVYYYRKEITAQDRKSAEKRGADYEADDNAERLFEPTGEEFYITSIEESDD
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