NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181393_1119068

Scaffold Ga0181393_1119068


Overview

Basic Information
Taxon OID3300017748 Open in IMG/M
Scaffold IDGa0181393_1119068 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)670
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008779Metagenome328Y
F019028Metagenome232Y
F025154Metagenome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0181393_11190681F008779N/AKSNDAVYFVLNEKVLMKILGSMYKTTKHFNFGDWQEDLKPEMIEDFDEVYNNVKQW
Ga0181393_11190682F025154N/AMSPWEMVKQIAGHIYTDEQIDEMTWAECEEIINQEE
Ga0181393_11190684F019028N/AMKKFNVRDRVFLDEAINAFLRESKKFEEESKILGQRPIITYEYWEMMAKDVQDKLEMFSTQKANRQSKRYKEEITATEIEKII

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