NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181392_1202312

Scaffold Ga0181392_1202312


Overview

Basic Information
Taxon OID3300017749 Open in IMG/M
Scaffold IDGa0181392_1202312 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)570
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003196Metagenome / Metatranscriptome501Y
F024810Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0181392_12023121F003196AGGMQISKEVLIDVSADASNSSGVQTDGLLLSGIVFPAAMTGANVTFDFSYDGTNWKDVVETDNTEVTYVVSANNVVRVDPSGWAFATAGFLRVTSDGTEAADRQINLIFKS
Ga0181392_12023122F024810N/AILDFAFIQPVFTNIPGYGTVFVRDIDQDDSAKIAKAIYMEMGYDFGPPSYHIKIDKVA

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