NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181400_1021442

Scaffold Ga0181400_1021442


Overview

Basic Information
Taxon OID3300017752 Open in IMG/M
Scaffold IDGa0181400_1021442 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2134
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017831Metagenome / Metatranscriptome238Y
F078785Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0181400_10214423F078785N/AMCYNWLMNDLVDEPIHEQFEYGNYLIALHWLPQWKQFEARLYIKSNNGTIELGKFVNDSLYGARKMALNSLGGYSGVIPKDETQVS
Ga0181400_10214425F017831GAGGMIAECMIFLASVIPMGVDESKIIGQHLNCNDHVPQSMQEHASLYVEHFDKDNINTAVRIGWCESRGKVDAYRSDNGDTGLMQFVSWTWNWVAEKYELPEWDTWVVTRYGRPYTGKTLKTDIGFSFDRVQYVPYYNIMFASLLAEDIYGKTQWRDWSSSEWCWEDEEKWRNKWLNE
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