NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181407_1035456

Scaffold Ga0181407_1035456


Overview

Basic Information
Taxon OID3300017753 Open in IMG/M
Scaffold IDGa0181407_1035456 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1335
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015079Metagenome257Y
F036970Metagenome / Metatranscriptome169Y
F048232Metagenome148N
F090273Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0181407_10354561F036970N/ATKFKRWFTSVNRAIVAEMAMQKKTQKDLAEVLQIHPVTINRKLKDPGTFFLSELGQICETLNIDLKNPPNYGTGAN
Ga0181407_10354562F015079N/AMVQAQIESIQGKGDWKGKHGTMYTFEVRFNDGTIGEANSKSPEPPYKVGDEAYYEIKSDDQYGKKLKVSKNPPPPGGFQQFQPKANPNKDKQIIRGMCFKVAGMAWANQYKHKSFELPHHVMVQGVIALAKEYEQAFNEWMEE
Ga0181407_10354563F048232GGAMLNSETLPYEERVSRIMFLREHRRNLLRAYCEDGVTKREKEKLRQETARVQKALKKLDPDGMFPP
Ga0181407_10354564F090273N/AMKYWFEVEDAQRWGLSAAAVLAHLKYWIARNTEAGEDPCMTQSIARMQGHLPFLTFDQIRRALSKLEKGDAIYRKANGFDRRHTYCLAELPQASGEIATTKRQECHNEERNLPRVHIETNTSKRTRENAREELEYQRPSEEEVVEYFRDIGGTDVADQLGQEF

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