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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017753 Open in IMG/M |
| Scaffold ID | Ga0181407_1035456 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1335 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015079 | Metagenome | 257 | Y |
| F036970 | Metagenome / Metatranscriptome | 169 | Y |
| F048232 | Metagenome | 148 | N |
| F090273 | Metagenome / Metatranscriptome | 108 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181407_10354561 | F036970 | N/A | TKFKRWFTSVNRAIVAEMAMQKKTQKDLAEVLQIHPVTINRKLKDPGTFFLSELGQICETLNIDLKNPPNYGTGAN |
| Ga0181407_10354562 | F015079 | N/A | MVQAQIESIQGKGDWKGKHGTMYTFEVRFNDGTIGEANSKSPEPPYKVGDEAYYEIKSDDQYGKKLKVSKNPPPPGGFQQFQPKANPNKDKQIIRGMCFKVAGMAWANQYKHKSFELPHHVMVQGVIALAKEYEQAFNEWMEE |
| Ga0181407_10354563 | F048232 | GGA | MLNSETLPYEERVSRIMFLREHRRNLLRAYCEDGVTKREKEKLRQETARVQKALKKLDPDGMFPP |
| Ga0181407_10354564 | F090273 | N/A | MKYWFEVEDAQRWGLSAAAVLAHLKYWIARNTEAGEDPCMTQSIARMQGHLPFLTFDQIRRALSKLEKGDAIYRKANGFDRRHTYCLAELPQASGEIATTKRQECHNEERNLPRVHIETNTSKRTRENAREELEYQRPSEEEVVEYFRDIGGTDVADQLGQEF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |