NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1000108

Scaffold Ga0181344_1000108


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1000108 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34041
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (92.73%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025009Metagenome203Y
F039983Metagenome162Y
F042304Metagenome / Metatranscriptome158Y
F047492Metagenome149Y
F051929Metagenome / Metatranscriptome143Y
F059902Metagenome133Y
F088417Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0181344_100010814F088417GGAGMAERIYLVTGTQEGARLVKASLRQQALAHVASTEFNIRVATQDDLVNQIRAGTEVEQYRSPDQTELSLSEE
Ga0181344_100010816F051929AGGAMTEQRYLAGGQEFFYPHAGDPKAPENTKLLLLTTGGICTTGTWNHNWCLGWLPLPKRNMEKEDKK
Ga0181344_100010827F042304GGAGMTKLLNTYRAAPTAANRAKLQNYIAKHMMAVCMASPDEVAFLKANQFSI
Ga0181344_100010836F025009GAGGMSTALKVKWFTGAKGSVGIAKVQTDDGKIEYRLSPVDGFLEHMDVLQVVAWGDRFPVEAGDVLFGAEK
Ga0181344_100010838F047492AGGAGMSFDKNIFSQGQTLFTQDEFNKALGEAKAEIMAVAIQTTRQAMYLERRACAQMLLDMADADDEGTVCTALRNAAEEMMNRVPAQRQ
Ga0181344_100010851F039983GGAMKSHLNEELVKQVFFYSDEKRPDPLIADEVDIVQFAEKLEAVLRPLIAAEEHKRCVTIVAHMNREVANALAGQRP
Ga0181344_10001089F059902GGAGMDKYDQAIEFLKDVDPGSYYDECAELMEELVAKVESAKPKRQRFSAEDQAWLKQAGGGARYYAKARGLL
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