Basic Information | |
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Taxon OID | 3300017754 Open in IMG/M |
Scaffold ID | Ga0181344_1000145 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 29376 |
Total Scaffold Genes | 52 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 44 (84.62%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.2382 | Long. (o) | -86.2805 | Alt. (m) | Depth (m) | 8 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002539 | Metagenome | 550 | Y |
F012318 | Metagenome / Metatranscriptome | 281 | Y |
F028086 | Metagenome | 192 | Y |
F059611 | Metagenome | 133 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181344_100014524 | F028086 | GAGG | MTEENIPFAGNVKVPSDACEEVFFSLYPDFFYENSTALNLWTQGWQAALENQENKKPVIQLI |
Ga0181344_100014525 | F002539 | GAG | MSTINEHIWTKAGTDITLRWKMAGWIPPSEIQGYRDKWRYYQNLPLRQLDDYAKEQYEAVLKKAKVARIK |
Ga0181344_10001454 | F012318 | AGGA | MYNSAFAPFGATYLVGTSPVQVISNNNMYPTGYRIVNLTANIVRVSWQPQEPNDATVTPVVTAPTAGVPSANTLAIPANGVGVFSSIPPNAWFIASAAASLEITSGEGIN |
Ga0181344_100014544 | F059611 | AGGA | MKDFSLPYITAKRLLDDYYQAMIAQNKPAAYEIANNLVEMALKLEDIAHDANAK |
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