NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1000145

Scaffold Ga0181344_1000145


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1000145 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29376
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002539Metagenome550Y
F012318Metagenome / Metatranscriptome281Y
F028086Metagenome192Y
F059611Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0181344_100014524F028086GAGGMTEENIPFAGNVKVPSDACEEVFFSLYPDFFYENSTALNLWTQGWQAALENQENKKPVIQLI
Ga0181344_100014525F002539GAGMSTINEHIWTKAGTDITLRWKMAGWIPPSEIQGYRDKWRYYQNLPLRQLDDYAKEQYEAVLKKAKVARIK
Ga0181344_10001454F012318AGGAMYNSAFAPFGATYLVGTSPVQVISNNNMYPTGYRIVNLTANIVRVSWQPQEPNDATVTPVVTAPTAGVPSANTLAIPANGVGVFSSIPPNAWFIASAAASLEITSGEGIN
Ga0181344_100014544F059611AGGAMKDFSLPYITAKRLLDDYYQAMIAQNKPAAYEIANNLVEMALKLEDIAHDANAK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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