NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1000620

Scaffold Ga0181344_1000620


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1000620 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13894
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (25.81%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009003Metagenome / Metatranscriptome324Y
F040621Metagenome161N
F079655Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0181344_100062027F009003N/AMKAKDKAWQLYSNYFDIVEAGDQHGDLAIMHMRAINAALYCVDEALTNAPDDIVNDFDGTGEYYSVKAYYHHVKNEILKMNGSKEDALNRRAETRANEPAADVRHS
Ga0181344_100062028F079655N/AMSDQKKETAMRRLSKALRKRFQGPSVNITWIELDAFMMKAQTWEMENILNSYNEGYTDCKAGLPNKAENESNTDV
Ga0181344_10006205F040621GAGMLNFNVASHIQRERLNTCKKCKFYNGTFGTCGTPIVGNNVNEEENDVTYYKEKIKLCGCFMDVKTKFRFASCPARKWFAQDMKEEEIAALDEFIKRISKTNRIQQEDLQMLYYWYSKITKKHERPSGCSSCIRDLIREFHRQLGKVDKP
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