NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1001182

Scaffold Ga0181344_1001182


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1001182 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9692
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (8.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F008073Metagenome339Y
F024318Metagenome206Y
F034898Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0181344_100118212F024318N/AMRKHTYLNKEIERPGDLAPKGIKSTYQTEKLPFNETFERLWKLAK
Ga0181344_100118221F001775N/AMRELLDNERIRIATIAFLIGVVLTFVIYPRPEQETVYKYETVTKTDTLLVEIKDTVYIPKTKIKTQVLRDTVLINFKPKISRFETSFPFDNGSTSVSGEVLGEVLKMTATNDYKLPVVTNTITETKTETIVVKPKGIYLGVGVSSLLQPNAKVAYLDNKYLFSYQFEPLQRVHQIGVAKKLF
Ga0181344_10011823F008073N/AMNEIILTHLRKMEFVCGLKQFKEYKKEEANELLACLSKLFGSFGWMTDARVDYILHAGMRGQYGDFYHVNEKTVSVWINQYYAHHQSQIVQEVQALNNKEREYTNEEIEHWKEIGRQTFRENYQHAKETGTCRHIAEWGVYWFNRFQEKGILKPWEFNVEELESDVRKELRLTRRYVEESTVGAKTKNKIWKLFILDAIKENKNLDKLI
Ga0181344_10011826F034898N/AMTKEEIILELNYRSTQKYLVYLALQEIMLDYYEDVTMLKAFDGDLKTKHKNMINALKRKSSEAFRFLENYDGGEATIKQFHEFVTLFERLHNSIDRGGRVFNDCLNAVEQILNDYEKAEN
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