NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1007305

Scaffold Ga0181344_1007305


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1007305 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3638
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012096Metagenome283Y
F037052Metagenome168Y
F053035Metagenome / Metatranscriptome141Y
F058718Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0181344_10073051F053035GGAGMVSPFELRFNIFNTAKELLVKQHEANLAAWEVLNKTSKEAADLAPKFPTTEEIIDKAIEINTFISGQTTKELTNVAKKLAGVSVIF
Ga0181344_10073053F037052GAGMIEMGKQGASQKMIWSELGISKNTAESLKKSTPEFAEALDLALVHAQAFWERELLANVDNKGYNSRLAEIALRGQFQSDYRETRDTKVDLKAEVKIDFNKEVQDLIAALKS
Ga0181344_10073056F012096GGAGMSTWLIAAMGLVYLYVGLEQFWKGSVGTGIMFIGYAIGNAGLVMVAK
Ga0181344_10073057F058718AGGAGMVECYGSEFEVPDLLVSKFLKDFETLPGSGFREGVYQIRESIYDILDVVAEDPEMLHEPEYHTDFIRALAMKHAMGELGILLDS
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