NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181344_1030140

Scaffold Ga0181344_1030140


Overview

Basic Information
Taxon OID3300017754 Open in IMG/M
Scaffold IDGa0181344_1030140 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1659
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026552Metagenome197N
F049433Metagenome146N
F049442Metagenome146N
F086640Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0181344_10301401F086640N/AMKKFILLEEEKLQIKSMYGLTEAPMTPPAPARPTTVMDTLSVAPNKLLFQNSSNNNNVIFLSVTDAAGKAIPNTTYKYKIGGSYSFFDFNVNIRNLKRDAQGNLIGEVLPSNSMAASAMRTLIPKQNLTKDGWLMIKIPNQKLTEGIQSLKSSKG
Ga0181344_10301402F049433N/AMKKFIITEEEKSRILGMHQEHGYNSLNESPSGVGFGPEMNGLKIQKSEQNEQDVEQINDPKIINAVTATLKKLMMSPKFSTDDMLFKLIEEGKLVKAYRLHRNLNTNVDYVDYELFDDILNNPETKDIVRLLPNLKNTLINYYS
Ga0181344_10301403F049442N/AMNKENLEQGLTKLLKTFFTKKYYRDFSDLTVVLNEYEEDADDVDDEGNWSSAESYYFTVYSNNFNGSQPELELYNLSRELFGNIIGKSNWIDIEFKNYEN
Ga0181344_10301404F026552N/ALNLLENDIIEKFEVSVSPYESKILVIKMFLNITKDEFIGTGESTPRLSEWEVRGKLWENYNLDTAWWHAHIIPNRILKPLVGKDYFIKILLFVVDKNGIHLFTEN
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