NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181411_1001206

Scaffold Ga0181411_1001206


Overview

Basic Information
Taxon OID3300017755 Open in IMG/M
Scaffold IDGa0181411_1001206 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9477
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021099Metagenome220N
F027355Metagenome / Metatranscriptome195Y
F047384Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0181411_100120611F021099N/AMAFSDLTLTRNNIDALEELTFKGVNVTTGTTTLNLSEKDNLILGKAIKLLKTDILENLREYINDSTYATETSLLDAIHAADSEELLVDLLSYKFLELWFAQDATHRDSYSFTKAGKYYNMYNQYLTANLRRLSGLLAKPKTTPRVRFMSMY
Ga0181411_10012063F047384N/AMPKLVNIKVVTDTGGTQTLTIQNYAEADELEFWGSTFEESLDGSLRTNFRDFRRKIGLTYNLCTTPDTYRSICNNIATDLINGATFIYIGIDTNTLIRVVLDDGFASRVQYANQHGLFIPKINFTAFDLGLEITLNFKDYRFVNEAVTVQENYGLITQSVTSQLDYGNLT
Ga0181411_10012066F027355GAGMGRITKVTGEFMGVRFEVKPTPIRFDKIIEERRNMLMNWYKENHPKLHKKLDNDKISIDDYTMEDLDGINAWRLDEEFRAKYCKYTAQHSMKLDKEITDATWKSDDLELGTLEEAWDFFTNRRQVPSNGVGVL

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