Basic Information | |
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Taxon OID | 3300017755 Open in IMG/M |
Scaffold ID | Ga0181411_1001206 Open in IMG/M |
Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9477 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F021099 | Metagenome | 220 | N |
F027355 | Metagenome / Metatranscriptome | 195 | Y |
F047384 | Metagenome | 150 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181411_100120611 | F021099 | N/A | MAFSDLTLTRNNIDALEELTFKGVNVTTGTTTLNLSEKDNLILGKAIKLLKTDILENLREYINDSTYATETSLLDAIHAADSEELLVDLLSYKFLELWFAQDATHRDSYSFTKAGKYYNMYNQYLTANLRRLSGLLAKPKTTPRVRFMSMY |
Ga0181411_10012063 | F047384 | N/A | MPKLVNIKVVTDTGGTQTLTIQNYAEADELEFWGSTFEESLDGSLRTNFRDFRRKIGLTYNLCTTPDTYRSICNNIATDLINGATFIYIGIDTNTLIRVVLDDGFASRVQYANQHGLFIPKINFTAFDLGLEITLNFKDYRFVNEAVTVQENYGLITQSVTSQLDYGNLT |
Ga0181411_10012066 | F027355 | GAG | MGRITKVTGEFMGVRFEVKPTPIRFDKIIEERRNMLMNWYKENHPKLHKKLDNDKISIDDYTMEDLDGINAWRLDEEFRAKYCKYTAQHSMKLDKEITDATWKSDDLELGTLEEAWDFFTNRRQVPSNGVGVL |
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