NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181411_1058313

Scaffold Ga0181411_1058313


Overview

Basic Information
Taxon OID3300017755 Open in IMG/M
Scaffold IDGa0181411_1058313 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1180
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007985Metagenome / Metatranscriptome341Y
F097119Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181411_10583131F097119AGGAGMQKLISNREMFRQLLARDITAILEDVNAGTWVDMTYLRRNLHNTLSARHYMNLCTAQGHCYTSFSDRFYRAMQSINDTGYGLTVRKDKQTNKLFVFSTKFADNYVEAIADTFEDWTTCYKSNRGYEIN
Ga0181411_10583132F007985AGGAMQQQYKVNNKVFNNITEASAYVTTLNKAVTIQPYTPPTKASIKLTVVRNMLIREMLNWAGSFVHSMSPSTDVDWMYSVEDDTGFSDAGDTWYEDLGNVSFGSNLEWEDAKEDYESAVSNFDSLLCTYDNYTTVDSLSEMLNTMYHTMSDHSSETDSYIGEIRHSIKQFCEGNSNIAHSYDHPRRRTTISFVGNVDKMYKAYMLERNS
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