NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181420_1045839

Scaffold Ga0181420_1045839


Overview

Basic Information
Taxon OID3300017757 Open in IMG/M
Scaffold IDGa0181420_1045839 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1410
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031256Metagenome / Metatranscriptome183N
F039823Metagenome / Metatranscriptome163N
F040053Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
Ga0181420_10458392F040053AGGAGMKAYLINTKDELIVEVDVRDYHHKLELLNCRMLEVYPYNLNGNDIWVDEEGNLKESNYFAELDVDNEGIANYVISGNALVLSCDNEGDSADVKDLTIEELKSRIKFHGRRFIEHNGHGFTTKAWEDA
Ga0181420_10458393F031256AGGAGMTIPYWQIGIKIGAESGQVNVHSDALPDASWEYAIEHAMDTAKAVHPTEKIEFLYVKEYN
Ga0181420_10458395F039823N/AKTFNVSYWKQSTGQTGQCLSERGQKIYDTLAPIYEEVVGLPLSKMKLYKMSLEMSRGAKADEGFYIQNTATTAFMVLVQDMTSVCRAIRKGKEFKSMSYGSFNVTNLKDLAKSKLGRKHKVA
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