Scaffold Ga0181420_1056975

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181420_1056975

Scaffold Ga0181420_1056975

Overview

Basic Information
Taxon OID	3300017757 Open in IMG/M
Scaffold ID	Ga0181420_1056975 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1246
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029745	Metagenome	187	Y
F040056	Metagenome / Metatranscriptome	162	Y
F073529	Metagenome	120	Y
F077179	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181420_10569752	F040056	GGAGG	VQTQLDFRLGTLVRWNAGNTGEPEDIDELGIVIQMPGEHWSGNYHISWCTSNTVSHHSPDMVEESLYQQQMEIVG
Ga0181420_10569753	F029745	GAGG	VASKAPRVGDVVKSRVTTESVAGFIVGKDGIHVWVRFFDTEFEAGSSWDVYTRRDTLEVLSRANPT
Ga0181420_10569754	F077179	GGAGG	VKQYDYKPGDRILFFHGCPTDEAGPEEIGWIVHRDYDDPSEPAVMVAFPEPNKNGLLHYFDVELREWEKAGTIEVKRG
Ga0181420_10569755	F073529	GGCGG	LGAIYLRWQMKIGDLVILRSGRYNFLPQAGGRAKWVWAEVLGVITDDRGFVDGTAEYKVYTADNKHTWSHIEDLKIVE

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