NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181414_1001802

Scaffold Ga0181414_1001802


Overview

Basic Information
Taxon OID3300017759 Open in IMG/M
Scaffold IDGa0181414_1001802 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6414
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077379Metagenome117N
F095622Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0181414_10018024F095622GAGGMQYNTTHVKLAKTFLANKNVEVYFDDERTEFSISVDVNNNRIWTDGNRGLWSTVAKGVKVRHANFLVTKDEDDEEWSGGLAGSIHYDGSGEDGTWFDGGDVETALINKTKDKESDGMIYTDTAFLVNLQKYMEEHCDFDMQLCEYLDFDYSEQGMQDDEYVNLDVECDADFWLYVIDEMKAEGVAHRQIGEEDIVITAVA
Ga0181414_10018028F077379GAGGMLTQKALTKNLTATLCNTTNTLFVHKNNKAHLQYTVNSNKVIRNLTQQQLNAFNMLPATFMQKAKNFVVNNALVKQLLNN
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