NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181410_1096488

Scaffold Ga0181410_1096488


Overview

Basic Information
Taxon OID3300017763 Open in IMG/M
Scaffold IDGa0181410_1096488 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)860
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017556Metagenome / Metatranscriptome240Y
F062747Metagenome130Y
F069990Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0181410_10964881F062747N/AGQGKTQQQYTDSTRFAWYGVVGMTLLVILLSLLGGCATTHETSKECCKSKKTSTK
Ga0181410_10964882F017556N/AMAYAKFKVGQVVSFPSAGTVGKSARKGGFITGVEKMYELKEENKRYYPNGKCRGDLTTQQYLSNNDFKGYAYRCKTIQPSGFTAEIVIVEEFKLKLSTEEKVLNSYTIFEGLKLKYS
Ga0181410_10964883F069990N/AMKKLLYFLVLGVTFTSCQKDEFEIPTNYQFEMTGRTSQDINGYYHVSINPSESQQSLHRFGAKVTNVDKFNLPTQVIWRCDAFWYTPDTLGHT
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