NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181385_1018756

Scaffold Ga0181385_1018756


Overview

Basic Information
Taxon OID3300017764 Open in IMG/M
Scaffold IDGa0181385_1018756 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2218
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016271Metagenome248Y
F025171Metagenome203Y
F044433Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0181385_10187562F044433N/AMENMNNQGKRPEQYEDSARFAWYGVVGMVVILILTSLLMGCATTNETPKKPCCKTEKKC
Ga0181385_10187565F016271N/AMGIFQKITSLFAKKQEIDKEIAILQKSCKHSKKSIKIIREHVDSTSPVIRWVCNECSMVVGYPNINEINGFLNNE
Ga0181385_10187567F025171N/AFKQGNQFKINNDVYQYTEHNNNELGCIVNTTTGYVCNISYIGRTKVQGFTFVLGKKVNVELNLKTLKFVS
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