Basic Information | |
---|---|
Taxon OID | 3300017765 Open in IMG/M |
Scaffold ID | Ga0181413_1001074 Open in IMG/M |
Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 8568 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (94.12%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F009527 | Metagenome / Metatranscriptome | 316 | Y |
F054789 | Metagenome / Metatranscriptome | 139 | N |
F090175 | Metagenome / Metatranscriptome | 108 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181413_10010741 | F054789 | GGA | MTREQQRRFDRMAAARLSKMNGGIPRHIALSNSKSITLRNKLKRLGIEGEHVNAALNMVDEIGLQEVMSRQPLGSRFASMPQSRHKSNIWKP |
Ga0181413_10010742 | F009527 | GGAGG | MKRNVFPPSIVNLLLQEGQRWLVNGEKREALGTGIIPIVASARGGKTSLAYAFIDYVIEHTNRPVILDSFPQVVIDEGIPLHWVGRVSNTSFNDIAKVEGPAVWLLDDSATHFNSRSAMSSTNQTLAKSAGVLSHFGGGMTVLFTTQSMSGIDLSLLRYTTISPIIRWVDSDLIPQERKEWKGEIEHGQYELRKVCKDVRFRDYFWSAKDRMLVKAPFPKFLSKEVDPKKADLLSRPMRYHSIEDKEVMLGIVKPPQKRRKKRKKVEP |
Ga0181413_10010743 | F090175 | GAGG | LNQENEETGSNGGSKGRTWADVFVGATYLTGGALFIISMGIVVYFLSGKIPGWFYIAIFSSVVFVPFMMERAKDDASLILVSDGPHRLTEYRIGNRVGLDIEGNSVLFQSKSGVLRQVLTSIDVENKTAIGSEFANATQIDQVRDLTTLQKMVEMLQSTLKESRISAQTVGVEVEKQSIEIVDWALKTIYGAIIPTEVSNAFGIEEEIVQMEIDDTIESMAEDFE |
⦗Top⦘ |