NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181413_1020370

Scaffold Ga0181413_1020370


Overview

Basic Information
Taxon OID3300017765 Open in IMG/M
Scaffold IDGa0181413_1020370 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2079
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005537Metagenome / Metatranscriptome397Y
F068127Metagenome / Metatranscriptome125Y
F070551Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0181413_10203706F005537AGGMSDNVKFISEIERLLKQKQNDYGHFDHTSYVMVGVMEKYLSIHNNQDVKIPLKFFGLFMIFLKCWRIMQSENYKKDSFDDISGYSELLRRLVIDENKTKR
Ga0181413_10203708F070551N/AVFAQVGVLFKGDDKFTGDMNYPEAGGAKGLIGWINESGNILSGYKNDPRPKQAKPQSKEIPF
Ga0181413_10203709F068127N/AKDTIKKQTTETKLTALYSDWKKENDSIEKDFESQQQSIKTKGSQKVSQW
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