NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181413_1036004

Scaffold Ga0181413_1036004


Overview

Basic Information
Taxon OID3300017765 Open in IMG/M
Scaffold IDGa0181413_1036004 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1547
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009636Metagenome / Metatranscriptome315Y
F019391Metagenome / Metatranscriptome230Y
F051968Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0181413_10360041F019391GAGGMTNETIFIAANNGGLEIYKGVGNLIAGNIKTAKTFKYVMDTHGIDPDVDTIYTTSDMDFADECGFDHYDDARILMEEGLKLMEMTKAY
Ga0181413_10360042F051968AGGMNIEKVTNMMCDLVAYVDDFYNEKSGIYPIKGMTDMMVITAVQKHVANVGMDFCADSVDREWVRDIILADNDLKWGV
Ga0181413_10360043F009636GGAGMGYFYQDWKEKNMFVEKRKGQFVMNFGEAEKSMIENLERHVINLTEGASDEKRMAIGYMEYLADCLKKGKLEVKWNIS
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