Basic Information | |
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Taxon OID | 3300017765 Open in IMG/M |
Scaffold ID | Ga0181413_1036004 Open in IMG/M |
Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1547 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009636 | Metagenome / Metatranscriptome | 315 | Y |
F019391 | Metagenome / Metatranscriptome | 230 | Y |
F051968 | Metagenome | 143 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181413_10360041 | F019391 | GAGG | MTNETIFIAANNGGLEIYKGVGNLIAGNIKTAKTFKYVMDTHGIDPDVDTIYTTSDMDFADECGFDHYDDARILMEEGLKLMEMTKAY |
Ga0181413_10360042 | F051968 | AGG | MNIEKVTNMMCDLVAYVDDFYNEKSGIYPIKGMTDMMVITAVQKHVANVGMDFCADSVDREWVRDIILADNDLKWGV |
Ga0181413_10360043 | F009636 | GGAG | MGYFYQDWKEKNMFVEKRKGQFVMNFGEAEKSMIENLERHVINLTEGASDEKRMAIGYMEYLADCLKKGKLEVKWNIS |
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