NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181413_1247384

Scaffold Ga0181413_1247384


Overview

Basic Information
Taxon OID3300017765 Open in IMG/M
Scaffold IDGa0181413_1247384 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)526
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F048964Metagenome147Y
F073499Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0181413_12473841F073499AGGAGMMTDQQIEQWMRDNPWKANVIYPAGGIGFMMFIMYTCVQIID
Ga0181413_12473842F001655GGAGGVKQPENDHSKYFGNDGPIGNDAEIIVYYEQRGPAEPVLRIPFWYCKDELGLYENFEASVRRTAKALAESYTYWPDGYVHVQTIINQEYVNIL
Ga0181413_12473843F048964N/AVLRLDLDLSFDDKGNVVMSRQTLDKILFLASDELPQAEDDQ
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