NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181343_1010359

Scaffold Ga0181343_1010359


Overview

Basic Information
Taxon OID3300017766 Open in IMG/M
Scaffold IDGa0181343_1010359 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3012
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015867Metagenome / Metatranscriptome251N
F024743Metagenome / Metatranscriptome204N
F034921Metagenome / Metatranscriptome173Y
F075864Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0181343_10103591F024743N/ALYSHASGAYNEAKDAQDLIIMMNVLHLRLEHNMAYHKIAKRCGIKVNKVKLILFNYESRS
Ga0181343_10103592F075864N/AMNPDPNLWREIPQEVKDAALLLGNYFKKQGLDNWALYDVSSRKSVDNLENQVKKLETWKNKQLNGFID
Ga0181343_10103593F015867N/AMKYKVTYYDYDSDSYLTKDLYWMASYRGSFDFVPVSDGSKENWKGFSISGSGVNVFYNDKGMNITVDGFQEMKSGGYGKTTTFIQGVI
Ga0181343_10103597F034921N/AMSYIGVAPQDQENFQHKVVEAQIDFSNYIYPDSKESYWTTVDRYWPQIKDIVLMFTLLDEDELDRCVKERSPAIGSIFNNAWFKAPDDGRIHLIPAWHIFCDLCSESYLLNENV
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