NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181343_1010381

Scaffold Ga0181343_1010381


Overview

Basic Information
Taxon OID3300017766 Open in IMG/M
Scaffold IDGa0181343_1010381 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3009
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014838Metagenome / Metatranscriptome259Y
F022636Metagenome / Metatranscriptome213N
F041152Metagenome / Metatranscriptome160N

Sequences

Protein IDFamilyRBSSequence
Ga0181343_10103811F014838GGAGMKESLKKIEELKNQLNTVKSELQKEFKAELKKIFVDNPTLDSIEMYVNNHEFNDGGATSFYIGYEDLKIVVEGEEVEREWDNATKEYKPNPVLESLIEHFGDVHCIHEDLYGDEYEHLSITREEVLKY
Ga0181343_10103812F022636N/AMNTYRRATLQDLAKLGYVPNTQKYKEHIEFARKYYPPEATTMVMSIHSEYNDCTYDNSFQYIIVYDMDGNELPPLKKTAKECREHWTTEYLPIPNTSHGHYGAFESDEPLEDVVIPLTSEVPELYIKES
Ga0181343_10103815F041152AGGAMNIVDYIVKNWDTLPKSKFDEDRIVIFKEIENDDWGYGHHSYEGIGVDKDGNVTWCYSSGCSCSGGPSLETKKDLKVFVVNEGIDLNVDPSTINFNSLHVEFNSY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.