NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181343_1021895

Scaffold Ga0181343_1021895


Overview

Basic Information
Taxon OID3300017766 Open in IMG/M
Scaffold IDGa0181343_1021895 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1969
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039946Metagenome / Metatranscriptome162N
F053825Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0181343_10218952F053825AGGAMKLIDILKELNKPKKIYQDPSKEVTIADLSPEEKEELFTKGSIMVKLPPDPSRPNISSASQVINLPKMDQIKREIIKNKQEFDIFTFSSDEDIKTIAKEINGLYNKLFRAMNALDKTIDLKKSGRI
Ga0181343_10218953F039946N/AMGLLGKILLNEGITIFRCDVLIKTAADQNKVEIYNEIRALNGVVVVTIEHSDFLDNKATPQYEYSLLKIKYIGRGDAKTSIKEIGIDAVTKNKVPGLLQFIPRYPTIVKVGSY
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