NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181343_1047821

Scaffold Ga0181343_1047821


Overview

Basic Information
Taxon OID3300017766 Open in IMG/M
Scaffold IDGa0181343_1047821 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1263
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F011938Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0181343_10478213F000473GAGGMFIDKSNDKLKEHFKYGINQWTGEPNKPVFYTEEMKKAVHQVKKPSMLLMDIVMYPDFLALRLYEDNFLQFEGTKKEMVIDYVSKVKKLIESYGVRCELEGKPSERVL
Ga0181343_10478214F011938GGAGGVKEYYDVTHIVFIHSEQCHGTVESLGAYASTVKYKKEDGTEYSELMENEDFTIVDEIVFKHIEEAN
Ga0181343_10478215F000671GAGGMEKILCYSCNKSKNKLDVRKSSLLPINLLVCETCNSAKLEPRWVVILAGRSSGPDHVKEFIIKRRYLGNE
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