NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187221_1008203

Scaffold Ga0187221_1008203


Overview

Basic Information
Taxon OID3300017769 Open in IMG/M
Scaffold IDGa0187221_1008203 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4084
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020797Metagenome222Y
F025153Metagenome / Metatranscriptome203N
F079230Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0187221_10082031F020797AGAAGMIKLENILKSIPNQEIVESHLGQWEYPGRITRIPNNRITMQPDPRTGKPIEHILLIIGDQSGERQIGIPGGPNLFFPNDQSVTEYPIGKSKI
Ga0187221_10082034F025153N/ALIKLKDILEQSIGFQVPGTPKQQNIGRKTRQEFAKFFNNFEAGSTKTAISNYAEQIMRSDAPDEVKEKASQILNEMEKVAIDIQDELHTRQISDDDVAEKLFSYVNSEMDADDSIEFEQLLWYDNQIDSSINSGMIENAVAIMEQLLGQLEFIRGFIIQIFPEISPAGFKR
Ga0187221_10082038F079230N/AMIDSLIYGIVASSFVIGITRSVLLLYKRFPRLGFGLVYGSLGVKMFALGAFTLLARPLIENVIIYCFIILSSIIYSNVYLALKLHRK

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