Basic Information | |
---|---|
Taxon OID | 3300017769 Open in IMG/M |
Scaffold ID | Ga0187221_1008203 Open in IMG/M |
Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 4084 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F020797 | Metagenome | 222 | Y |
F025153 | Metagenome / Metatranscriptome | 203 | N |
F079230 | Metagenome | 116 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0187221_10082031 | F020797 | AGAAG | MIKLENILKSIPNQEIVESHLGQWEYPGRITRIPNNRITMQPDPRTGKPIEHILLIIGDQSGERQIGIPGGPNLFFPNDQSVTEYPIGKSKI |
Ga0187221_10082034 | F025153 | N/A | LIKLKDILEQSIGFQVPGTPKQQNIGRKTRQEFAKFFNNFEAGSTKTAISNYAEQIMRSDAPDEVKEKASQILNEMEKVAIDIQDELHTRQISDDDVAEKLFSYVNSEMDADDSIEFEQLLWYDNQIDSSINSGMIENAVAIMEQLLGQLEFIRGFIIQIFPEISPAGFKR |
Ga0187221_10082038 | F079230 | N/A | MIDSLIYGIVASSFVIGITRSVLLLYKRFPRLGFGLVYGSLGVKMFALGAFTLLARPLIENVIIYCFIILSSIIYSNVYLALKLHRK |
⦗Top⦘ |