NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187221_1048060

Scaffold Ga0187221_1048060


Overview

Basic Information
Taxon OID3300017769 Open in IMG/M
Scaffold IDGa0187221_1048060 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1382
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020815Metagenome222N
F067202Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0187221_10480601F067202N/AYKDIVIAAEDLECHTIDTVAEAIRDHIIDLDLATSKTLTGFTWRIDVRMRTDNAS
Ga0187221_10480604F020815AGGAGGMRLYMNKQGEWVGTQAEAKKISASMVDVPVDKPNLLKWLNTFTGAVDDAAKEVIEDKPKPGRVTQKAHAWDTIMQCAKNASINDLTMALIVYMDRV

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