NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187221_1103047

Scaffold Ga0187221_1103047


Overview

Basic Information
Taxon OID3300017769 Open in IMG/M
Scaffold IDGa0187221_1103047 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)871
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F029779Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0187221_11030472F012581GGAGMAKYTLYAKKVYYYRKEITAQDSKSAEKRGANYEADDNAERLFEPSGEEFYITSIEESDDEX
Ga0187221_11030473F029779AGGAGMMSDKEKYEELCRALVGIDATERYTHEDILSYVYNLKDTEEKYYDNKK
Ga0187221_11030474F008925AGGAGMTTKSKPKIDAVTLNLVNKLKQIDDTINEGAWEYIHLGDILRLQDAFHTTINHFDLKKKGGIGEHGEDKGKYTQFWHSDYVCHTDPEAYDPSKVEE
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