NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187217_1102713

Scaffold Ga0187217_1102713


Overview

Basic Information
Taxon OID3300017770 Open in IMG/M
Scaffold IDGa0187217_1102713 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)972
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013818Metagenome / Metatranscriptome268Y
F025847Metagenome200Y
F099119Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0187217_11027133F099119N/AMITLLQQLRPEIVEALEKNRDKYDYSITDLYNKLDTSYLYDDLSIRDMRDLTLYTDTDYHNWDSMDWRFGTKLLKKIK
Ga0187217_11027134F013818N/AMNSVKKYHEMRQDIVDKESLYLCSEIEKALKRIISYDDGMLDDKLFTKIKKPAIKLLKEWHL
Ga0187217_11027135F025847N/AFNNFGIAILFFLLGTYFTYYKIDQRLWNETTQKAWDIEARALNFPQKSCYNWQDIELIIFGEIQE
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