NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181425_1103992

Scaffold Ga0181425_1103992


Overview

Basic Information
Taxon OID3300017771 Open in IMG/M
Scaffold IDGa0181425_1103992 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)909
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030088Metagenome186Y
F039588Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0181425_11039921F039588GGAGGLKIHPYIQSTRKKGMEDLKFQTAEQVMKHSNTDHNADFYTNMNKGFAMAINGFRISVQWGPGNYVSDTDIRYKASHEAPMQHSIWGCDTAEVMIWGRDGDCLFDLVPFDHDTEEYDKEMFEAQGGHTDQVFGHCSSDCVAKMIGCLASCGDNDPR
Ga0181425_11039923F030088N/ALITLNQSEVFNFYGKMYVPFSAMSVVFNSKGATKKFDKDLDVLVHPTRGRLFQIPKNVEQFITVV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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