NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181425_1132091

Scaffold Ga0181425_1132091


Overview

Basic Information
Taxon OID3300017771 Open in IMG/M
Scaffold IDGa0181425_1132091 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)795
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009067Metagenome323N
F050306Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0181425_11320911F050306N/AKKREDVTVKNMLEIYGKSSKYRKKITWDTLYLITGWTHIQQTKDEKK
Ga0181425_11320912F009067N/AMKKNKTNQVWYLYANDIKELKRQCYDVISTLYVQLGQAPEAEIIVQMTNLFCNDLATNYGSMELDEIKYALNKHIRENDGPHFVNVPMWNEALRSYKMSKALKRQTNQIDQYELYKKRVESFSKAIDKREIKKIGK

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