NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181386_1108840

Scaffold Ga0181386_1108840


Overview

Basic Information
Taxon OID3300017773 Open in IMG/M
Scaffold IDGa0181386_1108840 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)861
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000126Metagenome / Metatranscriptome2021Y
F015994Metagenome / Metatranscriptome250Y
F029432Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0181386_11088401F015994N/AMFEVKEKDLFEKNMNNYELHQVWMKLKWEKEMDEWFDKLEKKHNEVQ
Ga0181386_11088402F029432N/AMVKYPKIIGWSVVITMWTSCGVTQEQGNNEVVNTVEDMIEWIGHDLESGKIDSTIADTYVINLKEIINTVKCENCDEID
Ga0181386_11088403F000126N/AMNKRNYNITRKKGEWYNAKVTDSYGNEYQNYFEFAHEANDWIYYIWEKEEWFNSVNSQELLANAIENCKRLDKNINVREI
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