NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181358_1038192

Scaffold Ga0181358_1038192


Overview

Basic Information
Taxon OID3300017774 Open in IMG/M
Scaffold IDGa0181358_1038192 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1853
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F001125Metagenome / Metatranscriptome769Y
F068816Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0181358_10381921F068816AGGAMPNWVYNTLTIQGPKSEIDFIKDKLNQPYKVLHDSWNMKTNAMEVSESVYSAPVFAFWNIHSPLEDGITMEEYVKQPTRLGTDTSAPDWFAKEVEHAKTQKDWYNWNTSKWGTKWDVAVSDGDE
Ga0181358_10381922F001125AGGCGGMGDRANFGFKQSNDNTIFLYGHWAGHGMLERLANAVEAARPRWTDESYATRICVSRIVGEDWKAETGWGLSVNRILDNEHKVPVIDWAEQTFTLMEEDLQTVVFSLSLDKFCSKYSQLVM
Ga0181358_10381925F000311GAGMYFELTAPNKLSFEMAYWDAQILGLDPHVLSALTFNVGTGSIEKVSKIRDKHNLIESYVSDYEPTGYTGR
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