NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1000099

Scaffold Ga0181432_1000099


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1000099 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15538
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001594Metagenome / Metatranscriptome666Y
F007647Metagenome / Metatranscriptome347Y
F009404Metagenome / Metatranscriptome318Y
F015417Metagenome255Y
F091856Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0181432_10000991F091856GGAGMKKDDVIIISCSVCGAMSHAIKNDRLPEGYRIKESEYVLCKICFGELN
Ga0181432_100009921F007647GAGLDQAKVNQVIKAFFSSLKIEEDKTLETGLSHNTTVQVLESATLQLVSENPARFESYVKFFEFGVMYLQDETDELPEVEK
Ga0181432_100009922F001594N/AMEKTKLTKNEYLDSLDPDNLNLEKKDLINFCHQCIDEWKNNKVGNFKYIVAMELMIGAVRITSDDVMKTVWKKILVWFWELQYKNALAEKEGMLKKLRELGSG
Ga0181432_100009924F009404AGGAGMSSDEPEHIQPKGEALVKYCPICGVEFTETVLTNRWLKCDSCESVFMVKIKTGD
Ga0181432_10000996F015417GGAGMEDYMVLVGIMSSALIAVNLYVIKSISNLCDRISHLEGKVNHK
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