NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1000151

Scaffold Ga0181432_1000151


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1000151 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13221
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (64.52%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016207Metagenome249Y
F043079Metagenome157N
F083239Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0181432_100015127F016207N/AMRYYILYPDNSEADTINDINQLGDDNGFGVFWANRGFNVLINAVEQEHDITNHFVIKDERNIGYSIEEFLDKIKSLKVRVQE
Ga0181432_10001513F043079AGAAGMKNVLNYKGSSMTWKITSKITDTYDFQDGSQNSYIVYVQDAAGVNIAAKEAYGIADRTKVIKELINEYQDYGIVKIEHQDH
Ga0181432_10001514F083239GGAMTENYLDLTIDEVYDVITNIDIWPQSFDISKKIAFMNHMINYFEKKEEYEKCAKLQRLIHDMEDNE
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