NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1002361

Scaffold Ga0181432_1002361


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1002361 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4186
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002667Metagenome539Y
F046089Metagenome152Y
F060453Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0181432_10023612F046089N/AMPAVIQGFVVTTKPKDPTLESFPTVDTIAAGATTTIVYPNSYKGVAISAAILNQDGTNPCTISLNGSISFSLSAGGQFNVNDQNIVSIKITAGAAGTTDIIAQVAPTLLTTEAQRFRIDR
Ga0181432_10023614F060453N/AMALKLKTGKTINKVLAGAGIVALGTVALNAISPGLMGGTLGKVILPAVSFGVGGVESVVGAVLTEFAGHASGSRALDNTLTETL
Ga0181432_10023618F002667N/AMEELLSSALILVACLCGGVSSVYIARGRSSINKHSRQRIKDFEADIKYLADTKKEEAQEYRKEIMRLKNVVSKAKDGPIVTDTDMKNTGLGEVIMQLIPKKYQKAASFLVPQVEEAVKKDPAIVERIYEKIKSANTGNKQTEPGSQAEAANTL
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