Basic Information | |
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Taxon OID | 3300017775 Open in IMG/M |
Scaffold ID | Ga0181432_1004487 Open in IMG/M |
Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3185 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000704 | Metagenome | 928 | Y |
F001606 | Metagenome | 664 | N |
F060030 | Metagenome | 133 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181432_10044873 | F001606 | AGGTGG | MTYGYDDVTTTSLGTGVAETQLNGGTSLSAPDPAHGFLAVIPYQSESAAFTVDESLLTAFRIQSDDVAIEPKKFVLPNVNTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYGQPLVANTVAPICGATVIYDTDGTNGAEQYYTRPTNESAAATAVDTRTQGGDMTIQGGNEITGLYTVVSGATATASQHDVGYSEFISPDFNTSMPYRVAVQPTYTGLGSAANAITGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRFSRN |
Ga0181432_10044874 | F000704 | AGGTGG | MPHTTGEILPSRVKAVITYDIANYGEDLFLPFTDVGLTETALTYSGVAMTRDLENSNQPMDVFPVVFSDTDAGLLLNEGNDTAFSQTYTFLPDMTAVIYAIHLNIPAVLTCSAYTSGGLNVGALHIKITERSTDNRLLYENTFQSGAATLSATGTSLHWFTRDIVETIQVTKGNPIDILVELITVVTGTNTRQEGYAPVAPYLKTAVMKRFTPAGIALHLHADLSHADGVLKYKKTRVSMLGQ |
Ga0181432_10044876 | F060030 | N/A | MVIQKLLVEEGIKRGLKDSRKYSVSVLGYDFIGLVSRLAVFFVMAFLINSYFIATIQGGIWLNSLGGFFNMKFPTTLPQWLTQLFTTGYKGFTFWNLVTTISVLI |
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