NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1006902

Scaffold Ga0181432_1006902


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1006902 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2671
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016882Metagenome / Metatranscriptome244Y
F053550Metagenome / Metatranscriptome141Y
F070556Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0181432_10069022F016882N/AMYYTAKVKIATDTPKGVKWNTETYLVNAVSVTHAESLVNEDFANDGVEFEVKAVSASPIVKVIGNTKKL
Ga0181432_10069024F053550N/AMREEIKKARLKKKVLDNYPNAKEVPFSDGVRIMSGDMYIAEEFYMPSTNDTDTAWEYAAIACKTKQNFDRTHPYRMDLSDIESKLNRINNRKVRGRRRVK
Ga0181432_10069027F070556GGAMGFHKRYIDDNQIIDLYREQGNQAVIDLYTKGVDAIITQGDLSEHVIDILEIGLLTETDKWNKISELISEASIKKGFDKQYL
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