NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1016921

Scaffold Ga0181432_1016921


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1016921 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1847
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053550Metagenome / Metatranscriptome141Y
F070556Metagenome / Metatranscriptome123Y
F092748Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0181432_10169211F053550N/AYPNAKVEYTNTGVQIMSGDIYIAGEFYLPVTTDVETAWEYAALACKTRQQFNRTHPMRMDLSDIESKINRINKRRGPRNKHK
Ga0181432_10169213F092748N/AMKVTKTYSSLNQVAAIDTKKVEHLGKNYATIDFEIKDHVNPTDFKYAKMKPVVGTFVIGNKRVDVTYSELNQILRTAGAATEQCDMAYRIGKWGRAQAR
Ga0181432_10169214F070556GAGMGFHKRYIDDDQVIEMYRSSGNQAVIDWYTKGVDAVITSGELSEHILDILEIGLLTNIDKWNKISELISDASIKKGFE
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