NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1018863

Scaffold Ga0181432_1018863


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1018863 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1767
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003270Metagenome496Y
F008596Metagenome331N
F008691Metagenome / Metatranscriptome329Y
F093971Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0181432_10188631F093971N/AKKDESENFIDTLKDLLADPHQDEAWNDKFKETVRKYFEI
Ga0181432_10188632F008691N/AMPLGYDVKEEATEIKKNLFESRDSFVMLVVAGVVGGIITRFVIPKSVTEGSVFSRFKSWFGYDQEEEEE
Ga0181432_10188633F003270N/AMARKRKRRSSKKKNGSKSIKSMLRQVVNKGAAPLAFWQQLSEKDYQVLNADGNYAALDYLGKLKVAANILTGSLTGRVVFADQYNPSPSGQPRINPAGVINKWTGIGVAAKLYGKIGKSMKLPEAAMIDRVGSKVIFGGAVGGFFDPPGNPGGYVSTANVTPNIMVQNRAQTNRSFATAQSNRSYVPLDSFDSSTGSAFR
Ga0181432_10188634F008596GGAGMSGAWDIATATSLLTGVAKVQINGGNNLTKPTQAVNLVETVPYTVSSGAYTAGESIALTAYLDSFSVDLLPKRMIVPPIQAGLGTHINIVAPILEAYECNTGLQEGATSQFIVSGQAQVANTVAPLMAMALHYSTTPPNRPEHFYHKPDDESSFTTATTNAGNDFTINDGMWLEDMYVSVFAGTPTVSQSISGYGEFSSNDFGNSLPLKVPMQPGACGLA
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