NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181432_1043735

Scaffold Ga0181432_1043735


Overview

Basic Information
Taxon OID3300017775 Open in IMG/M
Scaffold IDGa0181432_1043735 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1237
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001594Metagenome / Metatranscriptome666Y
F008755Metagenome / Metatranscriptome328Y
F009404Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0181432_10437351F009404N/AEVSPKGDPIVKYCPIDGVEFSETVLTNRWLKCDSCEQVFQVRTKKGD
Ga0181432_10437352F008755N/AMNKSLVARDFWRKIFNDNLINLSDSDARKQAVREFLNDPVNKKAGWHQKDSRFFRLGFQRVAKENNYNVMSIGVTPQPSRSKTQKGSMNINVKSKQKNPAPMGASIKPPTEEQKKFGALPQTPALEAQQDLAVQYSAQSVGQLCETSLNILFARMNVDPITQNERIALGEAYAPLCNKYLTGHSELIMPALITFPIMLARMAQMAKAKKEKEIQERYGLDNIPKDEPKKKSAWEDMSHGENKTNKK
Ga0181432_10437353F001594GGAGGMEKTKLTKNEYLDSLDPDNLNLTKKDLLDFCHSCIEEWKSNRVGNFKFIVAMELILAGVRLTSEDVLKAVWKKILVWFWDLQYKNALADNESMLKKLREIGSG

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