NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181394_1002205

Scaffold Ga0181394_1002205


Overview

Basic Information
Taxon OID3300017776 Open in IMG/M
Scaffold IDGa0181394_1002205 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8201
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002688Metagenome / Metatranscriptome536Y
F027691Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0181394_100220516F027691AGGAMKHTTLMLAVLLGLTITTGATADDSKTLEQRVANLENTMPKLPNGLFVNGEIEMFIDEDTYTSGIDSRAEVFVGMQNEVEAGPIDWAGGSARFDSHYSLNTALNNTIVEKQMGLGFGNTRLYLGETDAQRLGFAKTSKIGAPLVITESNSRIDHNEKVVLTFGGWNNNNEFDFDKHKMSKDMPVGASIGYDANSETVYAGLTASLMGLAEVSYMQIGSKDDIMGDDNQQGYAIGTSLYRFDIPVVLGVEMWDDKNTGTYTKENRMDYGAMYGLTDEVTLGYHRVENDDIGTNGDYLSAVYTQGPVEMGAYYHMTESQNLGTGVVTQNDNSIKASIKYKF
Ga0181394_10022054F002688AGGAGGMSDPNKPYHNKGAGIAFLIIAFMMLGVPVIIGTTLGWFNLFGILGL
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