NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181394_1044177

Scaffold Ga0181394_1044177


Overview

Basic Information
Taxon OID3300017776 Open in IMG/M
Scaffold IDGa0181394_1044177 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1517
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015659Metagenome253Y
F026438Metagenome198N

Sequences

Protein IDFamilyRBSSequence
Ga0181394_10441771F015659AGGAGMKNGLAEAIKKFRDSIDDKDYANLGAKGKYLTVPYRIKFVRDFFGERMSIQTDSTELANGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKVVGLNAVIGVKDKKIQNKKNTKELADEWIEVLKKTATHSVSVGKFEQNLNPLR
Ga0181394_10441773F026438N/ALPHTIRFFKKHILTPKENSEISNASFSGGTLIHLIVQDSLTKGIKIAEVIKSEKIQNKINEYEPLDEKDKKKFEFIVKEAEKTALNHLNNIAQLGSQTWQDEQEQILWTPPVKTYWLMYIDLVSKDWLGDLKNKFGTVTLTKTKGWTYSNVKCPDRPFYSDVQQVALYSKATGLKPFLSYASNCDRKLFTQDNCEDLKQENLDKALKELMIYEIAWEKKLELADGDLDTLAWLCCPDFSDIKKKSFWWTGVAQEQINRLLKHYE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.