NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181357_1168842

Scaffold Ga0181357_1168842


Overview

Basic Information
Taxon OID3300017777 Open in IMG/M
Scaffold IDGa0181357_1168842 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)797
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)108
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030434Metagenome185N
F090388Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0181357_11688421F030434N/AQIVQVILDRSQELQAAASGFARSTGEKANTPDHAGRYNRKINFHEFVAEHSEAAGAEIAVAQYMGIRNFIPTVNTFHDAPDIQLGNLGFEVKWTKYINGHLIIHKDYPRLSDVAILCVNKSPVYQIIGWMPVLWAKKAKYYNAADGNFWVSQRELFEMDALRKSVYGITEA
Ga0181357_11688422F090388AGGAMALLRLNCRVCAKIGPGMQTHKIVDEFINLPPNVVCVQCLGCGVMGIEMLLDTERMPDTD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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