NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181349_1039761

Scaffold Ga0181349_1039761


Overview

Basic Information
Taxon OID3300017778 Open in IMG/M
Scaffold IDGa0181349_1039761 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1868
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009526Metagenome / Metatranscriptome316N
F009679Metagenome / Metatranscriptome314Y

Sequences

Protein IDFamilyRBSSequence
Ga0181349_10397612F009679AGGAMALITLSEFKAVLGIGNIYADSIVQAVADAAENIILSYLIFDDVAIQSVKLKDNVATFYCYENTFVTGQVLTVSKCGAPFDGSRTVLESGYGASFDGLPSILDTRYNAYQIPFFTAAITNADITERKIIPVGRAVLTSQAALYDAVPEVRESAMAVACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYVG
Ga0181349_10397614F009526AGGMPATYITGRSLTLSINSVSYADQASTVTLEMENNQLVLEVLSGRAYKTVDRTATLNVELYLDDSSSAGIISALWDAANSAPDTTLSFSFDVNGDTFTGSVFPVYPTVGGAATDVLTTSLSFVVNDGSVGRA
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